The color shaded rectangles in the lower structure define these regions, and identify the relatively facile rotations that may take place where the corners meet (i.e. This keeps the peptide links relatively planar and resistant to conformational change. As shown in the following diagram, nitrogen electron pair delocalization into the carbonyl group results in significant double bond character between the carbonyl carbon and the nitrogen. This restriction is due to the rigid nature of the amide (peptide) bond. The conformational flexibility of peptide chains is limited chiefly to rotations about the bonds leading to the alpha-carbon atoms. The " Show Structure" button displays some bond angles and lengths that are characteristic of these compounds.
Color finale pro group function free#
As expected, the free amine and carboxylic acid functions on a peptide chain form a zwitterionic structure at their isoelectric pH.īy clicking the " Grow Peptide" button, an animation showing the assembly of this peptide will be displayed. By convention, the amino acid component retaining a free amine group is drawn at the left end (the N-terminus) of the peptide chain, and the amino acid retaining a free carboxylic acid is drawn on the right (the C-terminus). A simple tetrapeptide structure is shown in the following diagram. If the amine and carboxylic acid functional groups in amino acids join together to form amide bonds, a chain of amino acid units, called a peptide, is formed.
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